Details for R2W3_10A2_20191014

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  • Date & time: 2019-10-14, 09:25:43

  • Location: SB1323A

  • Animal subject: R2W3

  • Investigator: Mihály Voroslakos

  • Experimenters: Mihály Voroslakos

  • Project: FlexibleProbeUM

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-10-30 15:55:34 by Peter Petersen ADMIN
    Updated: 2022-04-12 16:07:59 by Peter Petersen

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
homecage_191014_092543 Homecage_Sleep Homecage Homecage_Rat 86956.16
linearmaze_191014_115934 LinearTrack_EndToEnd Linear track Linear_Track_Peter 86956.16
homecage_191014_123935 Homecage_Sleep Homecage Homecage_Rat 86956.16
homecage_191014_173457 Homecage_Sleep Homecage Homecage_Rat 86956.16
homecageDark_191014_180027 Homecage_dark Homecage Homecage_Rat 86956.16
homecageDark_191014_234343 Homecage_dark Homecage Homecage_Rat 86956.16
homecage_191015_234711 Homecage_Sleep Homecage Homecage_Rat 86956.16

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 1739123200 64 1 0.195

Implanted probes

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 41, 63, 34, 56, 40, 1, 32, 57, 16, 31, 42, 15, 18, 55, 3, 19, 39, 4, 29, 58, 13, 28, 43, 21, 54, 6, 22, 38, 7, 26, 59, 10, 25, 44, 53, 8, 23, 37, 11, 27, 60, 5, 20, 45, 14, 30, 52, 2, 64, 61, 50, 47, 46
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
Intan Technologies, RHD2000 USB interface board (256ch) dig 1 OptitrackTTL
Intan Technologies, RHD2000 USB interface board (256ch) dig 7 irSensor1
Intan Technologies, RHD2000 USB interface board (256ch) dig 8 irSensor2

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 R2W3_10A2_20191014_linear.csv 2 Head position 120
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491 (View in Atlas) 64

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Bad 9, 12, 17, 24, 33, 35, 36, 48, 49, 51, 62

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2019-10-16_131411 Mihály Voroslakos Yes 26 42132

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 100402 1.1552155324867 1 Pyramidal Cell Unknown 0.71711718890062 68.989968877091 0.79
2 47661 0.5484946748873 1 Pyramidal Cell Unknown 0.31472272927551 43.93528801174 0.54
3 117927 1.3562245121017 1 Pyramidal Cell Unknown 4.1805523756222 46.226022823177 0.69
4 108466 1.2474239506832 1 Pyramidal Cell Unknown 3.3005734515885 63.477233212881 0.75
5 39985 0.45995123552944 1 Pyramidal Cell Unknown 4.026509941228 94.503188791874 0.73
6 24244 0.27889181025491 1 Pyramidal Cell Unknown 0.24748391354562 57.488761060762 0.65
7 23152 0.26654880754612 1 Pyramidal Cell Unknown 1.0366275051831 43.23947760653 0.63
8 25494 0.29328468510336 1 Pyramidal Cell Unknown 1.6474464579901 75.834605149491 0.81
9 90143 1.0366845943209 1 Pyramidal Cell Unknown 1.4088725691401 51.98797494004 0.7
10 94227 1.0836153318408 1 Pyramidal Cell Unknown 2.9609347639212 69.635824424264 0.67
11 76894 0.88431054605338 1 Pyramidal Cell Unknown 3.4853174499961 80.253112811185 0.73
12 133974 1.540838684992 1 Pyramidal Cell Unknown 3.7693880902265 52.372957152612 0.71
13 21681 0.2498026862952 1 Pyramidal Cell Unknown 0.4151100041511 108.40878246712 0.76
14 15997 0.18428009272833 1 Pyramidal Cell Unknown 3.50065637307 123.4645155014 0.78
15 88611 1.0191721842684 1 Pyramidal Cell Unknown 4.604394488269 68.242375465112 0.7
16 80295 0.92376780193929 1 Pyramidal Cell Unknown 0.87178529173672 67.122328320573 0.69
17 63004 0.72491284916085 1 Pyramidal Cell Unknown 0.96819249571456 84.305250450968 0.7
18 2202192 25.325341938769 1 Narrow Interneuron Unknown 0.48996636078961 77.485536306636 0.23
19 32893 0.37846475004971 1 Pyramidal Cell Unknown 0.24321284163804 120.13196112022 0.76
20 23872 0.27471291733435 1 Pyramidal Cell Unknown 0.50268096514745 59.436050087066 0.62
21 34971 0.40238239118 1 Pyramidal Cell Unknown 0.62909267678934 51.529340840069 0.64
22 31628 0.36389291259547 1 Pyramidal Cell Unknown 0.85367395978247 130.64025307089 0.69
23 1210592 13.921893684731 1 Narrow Interneuron Unknown 0.91773281171526 66.166656435706 0.38
24 22953 0.26448365889909 1 Pyramidal Cell Unknown 1.6555570077985 140.26431173128 0.78
25 104464 1.2015848246361 1 Pyramidal Cell Unknown 4.7959105529178 50.010723361464 0.75
26 7689 0.088731523497986 1 Pyramidal Cell Unknown 0 244.57252456476 0.81
No data