Details for som5

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  • Date & time: 2019-11-29,

  • Animal subject: RoyerS_som5

  • Investigator: Sebastien Royer

  • Experimenters: Sebastien Royer

  • Project: Ground truth cell-types using various opto-tag approaches

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2019-12-01 14:01:33 by Peter Petersen ADMIN
    Updated: 2020-06-27 19:14:57 by Peter Petersen ADMIN

  • Notes:

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
som5

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit

Neuralynx, Digital Lynx 4SX (128ch) dat 32552 0 71 7 0.3815

Implanted probes

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label

1 2, 3, 4, 5, 6, 7, 8
2 9, 10, 11, 12, 13, 14, 15, 16
3 17, 18, 19, 20, 21, 22, 23, 24
4 25, 26, 27, 28, 29, 30, 31, 32
5 33, 34, 35, 36, 37, 38, 39, 40
6 41, 42, 43, 44, 45, 47, 48
7 57, 58, 59, 60, 61, 62, 63
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description

dat 65:71 Other sync signals

Equipment

File names

Epoch

Type

Framerate

Notes


Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups

CA1 – Field CA1 (View in Atlas) 1:64

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups

Bad 65:71

Analysis tags

Tag

Value

Description


Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID

Klustakwik SebastienRoyer Sebastien Royer Yes 0 44719

Spike sorted units

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