Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	19	0.3815

---

Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 124, 125
17	150, 151, 154, 159, 156, 152, 158, 160
18	137, 140, 129, 136, 138, 134, 130, 132
19	142, 143, 144, 141, 131, 139, 133, 135

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

---

Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140324-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140324-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140324-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140324-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140324-05-postrun.mpg	5	Video	30

---

Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

---

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

---

Analysis tags

Tag	Value	Description

---

Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	136	49002

---

#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	19060	0.79716453676794	15		Pyramidal Cell	Deep	0.47219307450157	115.94077806735	0.73
2	8033	0.33907315065507	15		Pyramidal Cell	Deep	0	110.45902036696	0.73
3	3951	0.16581349134401	15		Pyramidal Cell	Deep	0.25310048089091	160.90620489722	0.73
4	5150	0.21531312550945	15		Wide Interneuron	Deep	0.19417475728155	82.156697283501	0.73
5	9600	0.40147844856892	15		Wide Interneuron	Deep	0.9375	62.686640127078	0.59
6	8103	0.33865349135878	15		Pyramidal Cell	Deep	0.74046649389115	65.169165965465	0.68
7	21289	0.89034644718979	15		Wide Interneuron	Deep	1.1273427591714	105.09078332367	0.73
8	146448	6.119847400221	14		Wide Interneuron	Deep	0.68966459084453	75.420866833376	0.46
9	34720	1.4511852493874	14		Wide Interneuron	Deep	0.3168202764977	133.53972098349	0.73
10	8722	0.36541029116499	14		Pyramidal Cell	Deep	0.34395780784224	70.908962901529	0.73
11	10479	0.4386471863754	14		Wide Interneuron	Deep	0.28628685943315	97.028561632751	0.72
12	5002	0.20911736930584	14		Pyramidal Cell	Deep	1.3994402239104	116.23141155834	0.69
13	9129	0.38162195370897	14		Wide Interneuron	Deep	0.76678716179209	107.38725409425	0.73
14	8669	0.36291636898091	14		Wide Interneuron	Deep	0	67.54120692999	0.73
15	5012	0.21014267366813	14		Pyramidal Cell	Deep	0.39904229848364	75.697661613945	0.69
16	305231	12.755083811738	14		Narrow Interneuron	Deep	0.75680386330353	65.492951348833	0.34
17	10013	0.41845708949265	14		Pyramidal Cell	Deep	0.79896135024468	82.506244117396	0.61
18	1825	0.076944932527115	13		Pyramidal Cell	Deep	0	45.246976521495	0.57
19	6623	0.27888015608059	13		Pyramidal Cell	Deep	0.15098897780462	93.463558624412	0.71
20	10774	0.45034604531185	13		Pyramidal Cell	Deep	1.1137924633377	53.260173424313	0.66
21	12776	0.53659834216313	13		Pyramidal Cell	Deep	0.078271759549155	151.1147452268	0.73
22	16072	0.67190914102788	13		Pyramidal Cell	Deep	0.74664011946242	58.83673378549	0.67
23	8774	0.37996851133302	13		Pyramidal Cell	Deep	0	104.19274341569	0.68
24	7313	0.30586304214598	13		Pyramidal Cell	Deep	0	95.738199155637	0.71
25	3009	0.12647244514491	13		Wide Interneuron	Deep	0	182.06674689835	0.72
26	75919	3.1725678916585	13		Wide Interneuron	Deep	0.54004926303033	97.732973876151	0.46
27	4697	0.19685086064982	13		Pyramidal Cell	Deep	0.21290185224611	87.270768060531	0.71
28	49889	2.0850571194124	13		Pyramidal Cell	Deep	0.92204694421616	106.44690039006	0.52
29	5408	0.22605895809911	12		Wide Interneuron	Deep	0.18491124260355	91.415046057746	0.6
30	5972	0.25026154416179	12		Pyramidal Cell	Superficial	0.33489618218352	49.316594724843	0.59
31	12148	0.50874320404271	12		Pyramidal Cell	Deep	0	144.21916894756	0.56
32	7176	0.30104987620331	12		Wide Interneuron	Deep	0.27870680044593	73.130083452256	0.61
33	20326	0.84939116077449	12		Wide Interneuron	Superficial	0	123.40700606221	0.64
34	17347	0.7301870666907	12		Pyramidal Cell	Superficial	0	74.944928635076	0.7
35	23478	0.98227137809394	12		Pyramidal Cell	Superficial	0.2129653292444	64.155075369309	0.67
36	7629	0.31903421680867	12		Pyramidal Cell	Deep	0.52431511338314	65.222078788553	0.61
37	3436	0.14365098506499	12		Pyramidal Cell	Deep	0.58207217694994	134.70404206022	0.62
38	3455	0.14476748009866	12		Wide Interneuron	Superficial	0	63.471573277882	0.7
39	29212	1.2219094419789	11		Pyramidal Cell	Deep	0.034232507188827	103.59199627796	0.69
40	12739	0.53289090824569	11		Pyramidal Cell	Deep	1.0989873616453	80.181718937323	0.64
41	3502	0.14646361551031	11		Wide Interneuron	Deep	0	54.345317247243	0.47
42	6005	0.25113707958662	11		Wide Interneuron	Deep	0	104.83659836672	0.59
43	5015	0.21192937745718	11		Wide Interneuron	Deep	0	68.172693948052	0.6
44	10483	0.43833313545343	11		Pyramidal Cell	Deep	0.38157016121339	52.581686195828	0.48
45	2220	0.093195901367679	11		Pyramidal Cell	Deep	0.45045045045045	107.43093106667	0.6
46	22874	0.95593023696856	11		Pyramidal Cell	Deep	0.087435516306724	84.026392457298	0.5
47	2414	0.10265512723812	11		Wide Interneuron	Deep	0	121.08761019598	0.67
48	7128	0.29811180237737	11		Pyramidal Cell	Deep	0.14029180695847	63.233016920204	0.59
49	24982	1.0439763394727	11		Wide Interneuron	Deep	0	78.83747213829	0.62
50	10951	0.45770842681714	11		Wide Interneuron	Deep	0.73052689252123	54.801278479486	0.61
51	7944	0.33227902086759	11		Wide Interneuron	Deep	0	53.983914475871	0.6
52	2156	0.091166690820272	11		Pyramidal Cell	Deep	0.46382189239332	113.56646021902	0.62
53	965	0.040728724414885	10		Pyramidal Cell	Deep	0	126.88076216178	0.59
54	3419	0.1447132549708	10		Pyramidal Cell	Deep	0	127.38048064795	0.61
55	7874	0.32911697868641	10		Pyramidal Cell	Deep	1.0160020320041	103.73480085078	0.64
56	9243	0.38640495514377	10		Pyramidal Cell	Deep	0.43275992643081	69.180847970696	0.56
57	9552	0.39932337179684	10		Pyramidal Cell	Deep	0.10469011725293	113.40030718798	0.58
58	2946	0.12355162663433	10		Pyramidal Cell	Deep	0.33944331296673	78.167418347785	0.66
59	5185	0.21694747525681	10		Pyramidal Cell	Deep	0.96432015429122	101.72852884099	0.6
60	20474	0.85658875148102	10		Wide Interneuron	Deep	0	63.066680277821	0.61
61	32852	1.3729650083744	10		Pyramidal Cell	Deep	0.79142822354803	56.558019576424	0.57
62	17412	0.72777628407812	10		Wide Interneuron	Deep	0.80404318860556	70.611163345419	0.56
63	3828	0.16082213958237	10		Pyramidal Cell	Deep	0	92.843792134065	0.51
64	8084	0.34729074831323	9		Wide Interneuron	Deep	0.12370113805047	76.238194962416	0.66
65	7445	0.31145752783484	9		Wide Interneuron	Superficial	0.26863666890531	53.492318555349	0.52
66	21936	0.9167704286671	9		Wide Interneuron	Superficial	1.3676148796499	66.20474502613	0.67
67	5986	0.25327479529147	9		Wide Interneuron	Superficial	0	136.01805495633	0.62
68	6578	0.27919724264837	9		Wide Interneuron	Superficial	0	49.576595481516	0.59
69	5635	0.23562562232239	9		Pyramidal Cell	Superficial	0.70984915705413	59.991548618646	0.7
70	17294	0.72387091070332	9		Pyramidal Cell	Superficial	0	73.486436961715	0.53
71	7255	0.30532703338661	8		Pyramidal Cell	Deep	0.41350792556857	125.7082166708	0.69
72	4698	0.19795639809342	8		Pyramidal Cell	Deep	0	183.87968999933	0.59
73	5607	0.23491292036333	8		Wide Interneuron	Deep	0.17834849295523	186.83294533468	0.68
74	10927	0.4566974441958	8		Pyramidal Cell	Deep	0.64061499039078	67.513556441875	0.67
75	5556	0.23248830585077	8		Pyramidal Cell	Deep	0	66.139367522959	0.61
76	5262	0.21996299998281	8		Wide Interneuron	Deep	0.19004180919802	73.694788229706	0.68
77	4964	0.20790764584891	8		Wide Interneuron	Deep	0	248.43399677832	0.67
78	2892	0.12086374498011	8		Pyramidal Cell	Deep	0	58.151380038595	0.62
79	11646	0.4885966427042	8		Pyramidal Cell	Deep	0	109.64315729133	0.61
80	7580	0.31777039013325	8		Pyramidal Cell	Deep	0	109.33375257118	0.56
81	17133	0.7161085994135	8		Wide Interneuron	Deep	0.81713652016576	91.985503713772	0.64
82	7195	0.30244007136325	8		Pyramidal Cell	Deep	1.1118832522585	118.32170011866	0.64
83	4001	0.1692166536475	8		Pyramidal Cell	Deep	0	214.72350892336	0.63
84	183339	7.6614416302527	7		Narrow Interneuron	Deep	1.3035960706669	96.666667378628	0.33
85	59765	2.4974888463189	8		Wide Interneuron	Deep	0.26771521793692	65.933063654469	0.45
86	18378	0.76877661266257	7		Pyramidal Cell	Deep	1.2514963543367	63.777451342721	0.6
87	16228	0.67815293422646	7		Wide Interneuron	Deep	0.80108454523047	58.73046011438	0.62
88	10491	0.43875242873527	7		Pyramidal Cell	Deep	0.47659898961014	74.630639412135	0.64
89	10721	0.44884236652111	7		Pyramidal Cell	Deep	0.093274881074527	185.17351338628	0.61
90	5731	0.2397502485976	7		Pyramidal Cell	Deep	0.34897923573547	66.641675369456	0.67
91	26847	1.1220476919419	7		Pyramidal Cell	Deep	1.4899243863374	68.44037600465	0.66
92	23604	0.98643145645163	7		Pyramidal Cell	Deep	2.1182850364345	88.856920466356	0.6
93	14031	0.58635987885415	7		Pyramidal Cell	Deep	0.57016606086523	117.56944379132	0.64
94	21906	0.91610167631259	7		Pyramidal Cell	Deep	0.2738975623117	143.76586010716	0.58
95	30504	1.2750273332104	7		Pyramidal Cell	Deep	0.75399947547863	97.185943208539	0.69
96	7931	0.33185985910053	7		Wide Interneuron	Deep	0	247.87385773923	0.64
97	16127	0.6739235209967	7		Wide Interneuron	Deep	0.062007812984436	183.9519624315	0.7
98	8381	0.35219357597741	6		Pyramidal Cell	Superficial	0.11931750387782	128.63290877108	0.68
99	16854	0.70449919734681	6		Pyramidal Cell	Superficial	0.71199715201139	64.280007177644	0.68
100	9327	0.39477302066576	6		Pyramidal Cell	Deep	0	163.61610924376	0.66
101	4003	0.17103538633913	6		Pyramidal Cell	Deep	0.24981264051961	145.24254254307	0.72
102	19384	0.81030384950072	6		Pyramidal Cell	Superficial	0.41271151465126	92.609429177826	0.65
103	11098	0.46515338010433	6		Pyramidal Cell	Superficial	0.1802126509281	162.63693580141	0.63
104	13504	0.56480939229502	6		Wide Interneuron	Superficial	0.81457345971564	99.116360065191	0.65
105	5580	0.23348930586341	6		Pyramidal Cell	Deep	0	95.703719200185	0.73
106	10043	0.41981456790953	6		Pyramidal Cell	Superficial	0.099571841083342	74.814990946007	0.71
107	18476	0.77243879836668	6		Pyramidal Cell	Superficial	0.27062134661182	83.642357566928	0.65
108	40714	1.702186369214	6		Pyramidal Cell	Deep	0.39298521393133	86.468092749148	0.68
109	26599	1.1118279721944	5		Pyramidal Cell	Superficial	0.15038159329298	135.66918109652	0.69
110	14736	0.6160573041153	5		Wide Interneuron	Deep	0	123.16364624152	0.73
111	27687	1.1570077991423	4		Pyramidal Cell	Deep	0.79459674215336	50.621806294509	0.59
112	6570	0.27480937468137	4		Wide Interneuron	Deep	1.0654490106545	92.063385122288	0.66
113	2995	0.12650216383007	4		Wide Interneuron	Deep	0	86.032061499722	0.72
114	3682	0.15429087910914	4		Pyramidal Cell	Deep	0.27159152634438	89.434381236043	0.69
115	99346	4.1515923876279	4		Narrow Interneuron	Deep	0.56368650977392	72.823000139297	0.39
116	1507	0.064735208736672	4		Pyramidal Cell	Deep	0	123.8433741052	0.51
117	2769	0.11587943961691	4		Pyramidal Cell	Deep	1.0834236186349	117.75485472461	0.66
118	4487	0.18808909519286	4		Pyramidal Cell	Deep	0.22286605749944	70.781405476959	0.7
119	1473	0.062210406177486	4		Wide Interneuron	Deep	0	107.63757163382	0.67
120	3788	0.15896306629331	4		Wide Interneuron	Deep	0	168.25596381438	0.61
121	21373	0.89329320327963	4		Pyramidal Cell	Deep	0.23394001777944	58.111834751571	0.7
122	83904	3.5062700842186	3		Wide Interneuron	Deep	0.48865369946606	65.572115787683	0.46
123	2801	0.11712406299887	3		Pyramidal Cell	Deep	0	107.05585804197	0.64
124	53946	2.2543298628594	3		Wide Interneuron	Deep	0.2409817224632	71.321606563497	0.69
125	100587	4.2034196697633	2		Wide Interneuron	Deep	0.21871613628004	87.259455745457	0.54
126	13521	0.5651680084586	2		Pyramidal Cell	Deep	0	140.36659676338	0.7
127	6808	0.28537763519869	2		Wide Interneuron	Deep	0	78.052489296352	0.48
128	78938	3.2987385210686	2		Wide Interneuron	Deep	0.038004509868504	107.53063306728	0.58
129	40386	1.6876812216977	2		Pyramidal Cell	Deep	0.66854850690833	57.372494035275	0.61
130	48653	2.0334274100874	2		Wide Interneuron	Deep	0.020553717139745	83.837696336938	0.71
131	11170	0.46686986623788	1		Pyramidal Cell	Deep	0.08952551477171	165.33806064537	0.58
132	223038	9.3204275706762	1		Wide Interneuron	Deep	0.47077179673419	87.254178806202	0.44
133	9938	0.41544238819343	1		Wide Interneuron	Deep	0	72.769077864495	0.67
134	13155	0.54990767236201	1		Wide Interneuron	Deep	0.15203344735842	81.528196580851	0.63
135	3814	0.1607190348811	1		Pyramidal Cell	Deep	0	98.34513088974	0.68
136	24726	1.0333532739812	1		Narrow Interneuron	Deep	0.84930842028634	56.550942639113	0.23