Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 124, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140325-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140325-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140325-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140325-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140325-05-postrun.mpg	5	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	97	49073

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	488275	24.399093220711	16		Narrow Interneuron	Deep	0.90522758691311	111.76100837433	0.27
2	283783	14.16605455004	16		Narrow Interneuron	Deep	1.0923839694414	121.13042962474	0.29
3	1330	0.06643268309789	16		Pyramidal Cell	Deep	0.75187969924812	103.76423096404	0.6
4	4787	0.23938257518083	16		Pyramidal Cell	Deep	0.41779820346773	108.3754111195	0.65
5	213191	10.641878681565	16		Narrow Interneuron	Deep	4.5452200139781	64.078268580004	0.39
6	28854	1.4675621837514	16		Wide Interneuron	Deep	0.069314479794829	126.96118373528	0.43
7	9464	0.47246893582271	15		Pyramidal Cell	Superficial	0.42265426880811	108.02466435946	0.66
8	1407	0.070638327817975	15		Pyramidal Cell	Superficial	0.71073205401564	108.53229875406	0.65
9	37097	1.8520593123979	15		Wide Interneuron	Superficial	0.08086907297086	72.498695482092	0.5
10	10557	0.52748035890759	15		Wide Interneuron	Deep	0	346.40861761393	0.72
11	6445	0.32256238715665	15		Pyramidal Cell	Superficial	0.93095422808379	73.233469435736	0.66
12	58057	2.8995505217237	14		Wide Interneuron	Deep	0.89567149525466	112.18007989083	0.59
13	2557	0.12772906484411	14		Pyramidal Cell	Deep	0	97.892337607209	0.72
14	134397	6.7086947655721	14		Narrow Interneuron	Deep	3.422695447071	60.070474933391	0.41
15	2667	0.13367266308433	14		Pyramidal Cell	Deep	0	147.50991344158	0.72
16	8602	0.43022974115632	14		Wide Interneuron	Deep	0.1162520344106	96.58402183517	0.73
17	50337	2.5145874810545	14		Wide Interneuron	Deep	0.1390627172855	68.21491750386	0.72
18	9451	0.47181812162746	13		Pyramidal Cell	Deep	0.63485345466088	74.946781507959	0.73
19	2679	0.13433264654368	14		Narrow Interneuron	Deep	0.3732736095558	106.52362267331	0.25
20	3997	0.25336268765415	13		Wide Interneuron	Deep	0	185.14438617116	0.47
21	82604	4.1240198675471	13		Wide Interneuron	Deep	2.1669652801317	59.266137446477	0.44
22	3787	0.19147986500482	13		Pyramidal Cell	Deep	0.26406126221283	63.138207822632	0.64
23	8339	0.41628289832977	13		Pyramidal Cell	Deep	0.35975536635088	84.055016285131	0.65
24	29836	1.4927347878425	13		Wide Interneuron	Deep	0.10054967153774	65.47998340394	0.68
25	1621	0.081836635839582	13		Wide Interneuron	Deep	0	96.203139684852	0.67
26	8027	0.40187542499159	13		Pyramidal Cell	Deep	0	105.44155539009	0.63
27	14388	0.72064173055951	13		Wide Interneuron	Deep	0.069502363080345	97.430937967362	0.64
28	1960	0.097945682018259	13		Wide Interneuron	Deep	0	237.8406726944	0.73
29	6553	0.32818460451614	13		Wide Interneuron	Deep	0	180.83535837679	0.73
30	2279	0.11492675936738	13		Pyramidal Cell	Deep	0	201.01008677846	0.55
31	700314	34.95721055662	12		Narrow Interneuron	Deep	0.014279308995679	197.78758335252	0.24
32	786	0.039345695205133	12		Narrow Interneuron	Deep	2.5445292620865	210.2154858991	0.24
33	1165	0.059478774834549	12		Narrow Interneuron	Deep	0	205.9881414648	0.24
34	20078	1.002368894044	11		Wide Interneuron	Deep	0.24902878772786	66.795915267964	0.68
35	39514	1.9724347279984	10		Wide Interneuron	Deep	0.17715240168042	97.939623324785	0.65
36	108030	5.392571667386	10		Wide Interneuron	Deep	0.32398407849671	70.114763955484	0.52
37	12775	0.65806788887963	10		Wide Interneuron	Deep	0	96.251643115901	0.52
38	4588	0.22913250841835	10		Narrow Interneuron	Deep	0	74.992771365007	0.19
39	9600	0.48006554935027	10		Wide Interneuron	Deep	0.10416666666667	93.161122294997	0.45
40	13664	0.68270695245247	10		Wide Interneuron	Deep	0.073185011709602	64.870805730506	0.58
41	12868	0.64251399889608	9		Pyramidal Cell	Superficial	0.15542430836183	52.684593921022	0.65
42	3665	0.18469740894985	9		Pyramidal Cell	Superficial	0.27285129604366	133.89532964511	0.62
43	3993	0.20134321438562	9		Pyramidal Cell	Superficial	0.25043826696719	71.280173194815	0.57
44	4549	0.22726926809176	8		Pyramidal Cell	Deep	0	437.51626122175	0.65
45	733	0.036594067523039	8		Pyramidal Cell	Deep	0	151.37302059061	0.57
46	95809	4.7824509084789	8		Wide Interneuron	Deep	0.16699892494442	130.33529237168	0.54
47	453394	22.631836146013	8		Narrow Interneuron	Deep	3.0128321062917	103.28309923566	0.32
48	4255	0.21242852129729	8		Pyramidal Cell	Deep	0.23501762632197	98.165836008367	0.56
49	3340	0.16769680201295	8		Pyramidal Cell	Deep	0	82.879018151965	0.64
50	2583	0.12911608346441	8		Wide Interneuron	Deep	0	451.90874841881	0.69
51	25287	1.2623949289735	8		Wide Interneuron	Deep	0.079092023569423	124.19181934518	0.64
52	14774	0.73789451434814	8		Pyramidal Cell	Deep	0	172.24770160607	0.62
53	10709	0.53461843176994	8		Wide Interneuron	Deep	0.28013820151275	125.44592035335	0.59
54	527682	26.340095709306	7		Narrow Interneuron	Deep	7.8418441409788	112.13351851674	0.33
55	7946	0.39717387743522	7		Pyramidal Cell	Deep	0	93.315861451649	0.65
56	150002	7.4875754389685	7		Narrow Interneuron	Deep	0.60665857788563	83.996478276259	0.3
57	6191	0.31358874233941	7		Pyramidal Cell	Deep	0.16152479405589	88.254837500504	0.63
58	19650	0.98101506202599	7		Wide Interneuron	Deep	1.0687022900763	126.107809617	0.61
59	6790	0.3392437785033	7		Wide Interneuron	Deep	0	106.07960761507	0.64
60	201104	10.038558253802	7		Wide Interneuron	Deep	2.5509189275201	84.712911434333	0.46
61	11946	0.59642415411181	6		Pyramidal Cell	Deep	0.08371002846141	393.69295341947	0.68
62	20028	1.0013668096971	6		Pyramidal Cell	Deep	1.2981825444378	154.42279119824	0.61
63	7698	0.3883144097737	6		Pyramidal Cell	Deep	0.12990387113536	155.82999979656	0.63
64	4745	0.23720016958137	6		Pyramidal Cell	Deep	0	121.5141269748	0.71
65	5428	0.27344635493843	6		Pyramidal Cell	Deep	0.36845983787767	130.08487188727	0.73
66	8042	0.40504240319767	6		Pyramidal Cell	Deep	0.12434717731907	184.70631063323	0.64
67	14447	0.7215454281433	6		Pyramidal Cell	Deep	0.96905932027411	80.214188348859	0.66
68	12222	0.61023609943316	5		Pyramidal Cell	Deep	0.49091801669121	165.92283911795	0.69
69	3539	0.1766956466167	6		Wide Interneuron	Deep	0	143.63977078176	0.67
70	62399	3.1147463412381	5		Wide Interneuron	Deep	0.57693232263338	176.00403394191	0.66
71	10021	0.50144772451632	5		Pyramidal Cell	Deep	0.79832352060673	86.375791777869	0.66
72	3236	0.16184632446422	5		Wide Interneuron	Deep	0.30902348578492	151.64282803588	0.66
73	18648	0.93097923724094	5		Pyramidal Cell	Deep	0.6971256971257	89.173875107944	0.62
74	17212	0.85918927993749	5		Pyramidal Cell	Deep	1.3362770160353	70.729895403234	0.62
75	50067	2.4994859571768	5		Pyramidal Cell	Deep	0.81890267042164	133.60648629166	0.62
76	12173	0.60782167581574	5		Pyramidal Cell	Deep	0.98578821983077	100.66405403308	0.69
77	74682	3.7291202633196	5		Wide Interneuron	Deep	0.70967569159905	82.907505091513	0.65
78	2491	0.12612900427468	5		Pyramidal Cell	Deep	0.40144520272983	180.79652195887	0.66
79	32456	1.6202341890371	5		Wide Interneuron	Deep	0.40054227261523	153.7594150412	0.62
80	12913	0.6455370665179	5		Pyramidal Cell	Deep	1.1616200727949	78.641955696928	0.72
81	5942	0.29758775302293	5		Pyramidal Cell	Deep	1.1780545270953	116.97279836706	0.73
82	20077	1.0023269366558	5		Pyramidal Cell	Deep	0.099616476565224	126.27276236212	0.66
83	26434	1.319579327156	4		Pyramidal Cell	Deep	0	197.68990932422	0.58
84	11289	0.56353365623644	4		Wide Interneuron	Deep	0.35432722118877	59.318888934733	0.71
85	88359	4.4136476535062	4		Wide Interneuron	Deep	1.0298894283548	79.821762415193	0.61
86	8097	0.42288703269377	4		Pyramidal Cell	Deep	0	112.2083716499	0.69
87	7387	0.37578000071519	4		Pyramidal Cell	Deep	0.13537295248409	119.11370302662	0.7
88	7755	0.38754652644722	4		Pyramidal Cell	Deep	0.51579626047711	168.68423755542	0.58
89	137206	6.8489105015478	3		Wide Interneuron	Deep	1.4722388233751	65.072843797593	0.47
90	24786	1.2372323218783	3		Pyramidal Cell	Deep	0.68587105624143	70.921818312501	0.64
91	2880	0.14459907795645	3		Wide Interneuron	Deep	0.34722222222222	72.545272281712	0.58
92	13751	0.68905061960726	2		Wide Interneuron	Superficial	0.07272198385572	73.69824869708	0.58
93	64569	3.2232419420767	2		Wide Interneuron	Superficial	0.046461924452911	95.723997127964	0.65
94	17476	0.87237175949814	2		Wide Interneuron	Superficial	0.57221332112612	74.395970625128	0.68
95	15328	0.76515570188471	2		Pyramidal Cell	Superficial	0.065240083507307	73.564023116165	0.59
96	33544	1.6747372068268	1		Wide Interneuron	Deep	0.41736227045075	88.007819393363	0.53
97	170713	8.5215291019481	1		Wide Interneuron	Deep	1.540597376884	62.950162268923	0.46