Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140327-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140327-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140327-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140327-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140327-05-postrun.mpg	5	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	138	49324

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	24533	0.90371076041087	16		Wide Interneuron	Superficial	0.40761423388905	119.59282730743	0.6
2	171713	6.3254229433824	16		Narrow Interneuron	Superficial	2.4925311420801	77.04888129089	0.35
3	16729	0.61631870194123	16		Pyramidal Cell	Superficial	0.41843505290215	96.47634280563	0.64
4	15516	0.57173231725048	16		Pyramidal Cell	Superficial	0.38669760247486	101.66249470608	0.62
5	5671	0.20957591065376	16		Pyramidal Cell	Superficial	0	58.846274490159	0.57
6	15660	0.57711450868012	16		Narrow Interneuron	Superficial	0	88.674894526845	0.4
7	7022	0.25868964517902	16		Wide Interneuron	Superficial	0.1424095699231	118.55332892693	0.67
8	9703	0.35752950392201	16		Wide Interneuron	Superficial	0.72142636298052	146.00736574732	0.6
9	25195	0.92878336341121	15		Pyramidal Cell	Deep	0.35721373288351	167.39127412562	0.61
10	4537	0.16765161962402	15		Pyramidal Cell	Deep	0	216.87841821655	0.65
11	209066	7.7013149612378	15		Wide Interneuron	Deep	0.1674112481226	149.26238893949	0.46
12	6574	0.24296996221935	15		Wide Interneuron	Deep	0	218.91363309641	0.66
13	12500	0.46054387693348	15		Pyramidal Cell	Deep	0.08	96.071599969943	0.57
14	36205	1.3336699365714	15		Wide Interneuron	Deep	0.3314459328822	99.573174620053	0.59
15	6179	0.22765713125749	15		Wide Interneuron	Deep	0	132.05648351736	0.57
16	40038	1.4748596301573	15		Pyramidal Cell	Deep	0.94909835656127	90.374270237106	0.57
17	17161	0.63224019166298	15		Pyramidal Cell	Deep	0	163.45175900926	0.62
18	180785	6.6594788547898	14		Narrow Interneuron	Deep	0.21019442984761	70.27935716252	0.35
19	389566	14.350219896622	14		Narrow Interneuron	Deep	4.9259945683145	88.808743144777	0.3
20	19533	0.71977496104844	14		Pyramidal Cell	Deep	0	246.11171321285	0.58
21	260308	9.5888139060301	14		Narrow Interneuron	Deep	1.2331545707393	89.231111533617	0.28
22	614805	22.647441588637	14		Narrow Interneuron	Deep	1.2020071404754	171.04584019171	0.31
23	590566	21.754308901929	14		Narrow Interneuron	Deep	0.31325880595903	293.17723278751	0.28
24	3039	0.11227387869041	14		Pyramidal Cell	Deep	0	108.81263985687	0.63
25	4562	0.16830488463054	14		Pyramidal Cell	Deep	0	62.925330924775	0.67
26	8180	0.30165322321235	14		Pyramidal Cell	Deep	0.24449877750611	83.959615426781	0.6
27	21741	0.80102158197743	14		Wide Interneuron	Deep	0.091992088680373	109.66345201636	0.56
28	8997	0.3314956535078	14		Pyramidal Cell	Deep	0.22229632099589	73.575431030554	0.59
29	8938	0.33044644173854	14		Wide Interneuron	Deep	0.11188185276348	232.12309062304	0.57
30	5177	0.19073329840805	14		Pyramidal Cell	Deep	0	125.19689056301	0.68
31	14044	0.51742267594488	14		Pyramidal Cell	Deep	0.2848191398462	126.81522851175	0.64
32	23578	0.8688575816985	14		Wide Interneuron	Deep	0.042412418356095	158.21578560789	0.66
33	3713	0.13691209176215	14		Wide Interneuron	Deep	0	192.10354078986	0.66
34	33322	1.227557039774	13		Wide Interneuron	Deep	0.78026529019867	91.664619197194	0.65
35	26570	0.97893819087794	13		Pyramidal Cell	Deep	0.03763643206624	179.94886314617	0.6
36	2831	0.10475448391698	13		Pyramidal Cell	Deep	0.35323207347227	224.5434580805	0.72
37	15078	0.55551120128026	13		Pyramidal Cell	Deep	0.19896538002388	74.459509261418	0.62
38	3619	0.13333257806452	13		Pyramidal Cell	Deep	0.55263885051119	147.47765969657	0.61
39	2968	0.11171680864021	13		Pyramidal Cell	Deep	0	258.24387501518	0.64
40	14828	0.54773640515001	13		Pyramidal Cell	Deep	0	138.45393076775	0.6
41	30906	1.1384856069344	13		Narrow Interneuron	Deep	0.35591794473565	58.42471656808	0.37
42	5021	0.18563335752982	13		Pyramidal Cell	Deep	0	172.92764497343	0.67
43	29043	1.0699681628566	12		Wide Interneuron	Deep	0	207.10531151282	0.6
44	7137	0.26327850750546	12		Pyramidal Cell	Deep	0	139.37012842206	0.67
45	14439	0.53245221679717	12		Pyramidal Cell	Deep	0.069256873744719	187.32504988636	0.65
46	552007	20.333960249251	12		Narrow Interneuron	Deep	1.6358488207577	73.682837777651	0.32
47	318531	11.733712480897	12		Narrow Interneuron	Deep	0.55881531153954	95.370548342089	0.22
48	5056	0.1862603213559	12		Wide Interneuron	Deep	0.19778481012658	81.543961179576	0.69
49	12391	0.45650466996154	12		Pyramidal Cell	Deep	0.080703736583004	107.80387113801	0.65
50	397667	14.648677450146	12		Narrow Interneuron	Deep	4.1994935461077	82.782399881931	0.34
51	7350	0.27236907555757	12		Pyramidal Cell	Deep	0.13605442176871	297.78795105674	0.63
52	36944	1.3612399811481	12		Wide Interneuron	Deep	0.59549588566479	89.816330658075	0.64
53	5930	0.21846968224839	12		Pyramidal Cell	Deep	0	244.83045682146	0.59
54	6785	0.25069086810074	12		Pyramidal Cell	Deep	0	111.01368461809	0.67
55	3932	0.14499576159357	12		Pyramidal Cell	Deep	0	114.73133949193	0.67
56	11192	0.41236738420409	12		Pyramidal Cell	Deep	0.089349535382416	80.292064636792	0.56
57	9694	0.35737068898842	11		Wide Interneuron	Deep	0.30946977511863	65.529194998096	0.63
58	4998	0.18417018291814	11		Pyramidal Cell	Deep	0	91.428463798803	0.58
59	16041	0.59220655836921	11		Pyramidal Cell	Deep	0.12468050620286	67.002625505394	0.62
60	16162	0.59653972595717	11		Pyramidal Cell	Deep	0.3712411830219	133.2954386598	0.64
61	3788	0.13960512296625	11		Pyramidal Cell	Deep	0	84.570946674475	0.73
62	9794	0.36286560212246	11		Pyramidal Cell	Deep	0.20420665713702	66.100016634463	0.64
63	14332	0.52800157548715	11		Wide Interneuron	Deep	0.2093217973765	81.011064260667	0.6
64	34740	1.2799902069327	11		Wide Interneuron	Deep	0.54691997697179	82.82108204991	0.46
65	10308	0.38020675080987	11		Pyramidal Cell	Deep	0.19402405898331	81.099600902956	0.64
66	9720	0.35892104677662	11		Pyramidal Cell	Deep	0.41152263374486	65.480510815708	0.63
67	9023	0.33240698081258	11		Pyramidal Cell	Deep	0.11082788429569	105.63661963952	0.7
68	19108	0.70396979316754	11		Pyramidal Cell	Deep	0.15700230270044	167.81382204236	0.56
69	21957	0.80904844616511	11		Pyramidal Cell	Deep	0.31880493692217	180.33709705466	0.71
70	56371	2.0778584099339	10		Wide Interneuron	Deep	0.4612300651044	72.558447353416	0.65
71	87491	3.2229061318597	10		Wide Interneuron	Deep	1.1086854647907	62.20205487545	0.44
72	60536	2.2305193888347	10		Wide Interneuron	Deep	0.82595480375314	87.655788616036	0.68
73	104488	3.8490260211277	10		Wide Interneuron	Deep	1.5791287037746	51.55100658639	0.69
74	14056	0.51808438108429	8		Pyramidal Cell	Superficial	0.071143995446784	192.98016278991	0.62
75	502552	18.512229479888	8		Narrow Interneuron	Superficial	0.58700393193142	142.24744313366	0.3
76	109243	4.0242312333441	8		Narrow Interneuron	Superficial	0.35700227932224	131.75426088363	0.38
77	357707	13.176688036495	8		Narrow Interneuron	Superficial	0.23482906401049	276.44027219942	0.22
78	2497	0.092901002624863	8		Wide Interneuron	Superficial	0	183.32762984142	0.62
79	6905	0.25448561345376	8		Wide Interneuron	Superficial	0	150.45441800594	0.6
80	7038	0.26028776480341	8		Wide Interneuron	Superficial	0	199.42759845707	0.63
81	13823	0.5101617462225	8		Pyramidal Cell	Superficial	0.072343196122405	150.50952305943	0.65
82	4163	0.15373338440497	8		Pyramidal Cell	Superficial	0.48042277203939	165.17277222211	0.65
83	22561	0.83131735834014	8		Pyramidal Cell	Superficial	0.3545942112495	88.310381579453	0.63
84	1716	0.064372374348712	8		Wide Interneuron	Superficial	0	93.112945440312	0.64
85	4761	0.17559594579905	8		Pyramidal Cell	Superficial	0.42007981516488	120.05782347053	0.64
86	22796	0.83974799411718	8		Wide Interneuron	Superficial	0.3070714160379	130.13448106012	0.55
87	15622	0.57572844698672	8		Pyramidal Cell	Superficial	0.38407374215849	73.652075082985	0.62
88	10359	0.38989562839548	8		Pyramidal Cell	Superficial	0.19306882903755	116.64091849003	0.59
89	629387	23.184371321606	7		Narrow Interneuron	Deep	0.033365798785167	245.79902517826	0.31
90	38943	1.4345233102579	7		Pyramidal Cell	Deep	0	116.73274726165	0.59
91	11081	0.40925712130059	7		Pyramidal Cell	Deep	0	86.911704794626	0.64
92	392322	14.451779927169	7		Narrow Interneuron	Deep	2.7146068790432	89.559847513047	0.41
93	12779	0.47084620534187	7		Pyramidal Cell	Deep	0	171.8293251114	0.62
94	18332	0.67580668543128	7		Pyramidal Cell	Deep	0.054549421776129	141.84626386392	0.61
95	7672	0.28276226483397	7		Pyramidal Cell	Deep	0.1303441084463	141.77692542393	0.68
96	7005	0.25852094252875	7		Pyramidal Cell	Deep	0.14275517487509	143.81817866612	0.59
97	17462	0.64354024942831	7		Wide Interneuron	Deep	0.91627534073989	125.18213513236	0.62
98	492776	18.152104049568	6		Narrow Interneuron	Deep	3.0967417244346	71.198635597283	0.41
99	527705	19.438792567654	6		Narrow Interneuron	Deep	1.0801489468548	87.165301178486	0.32
100	192815	7.1027158040514	6		Narrow Interneuron	Deep	1.1565490236755	70.502843485939	0.38
101	14570	0.54185739603827	6		Pyramidal Cell	Deep	0.20590253946465	182.14471390721	0.63
102	73661	2.7140032216616	6		Wide Interneuron	Deep	0.81454229510867	167.21602851836	0.73
103	25753	0.94880895499398	6		Pyramidal Cell	Deep	0.34947384770706	84.716262849349	0.65
104	31408	1.156969593321	6		Pyramidal Cell	Deep	0.66861946001019	100.98722081309	0.58
105	11156	0.41222403065788	6		Pyramidal Cell	Deep	0	232.00861188329	0.68
106	24163	0.89010026710781	5		Pyramidal Cell	Deep	1.1587965070562	103.79252141101	0.69
107	31516	1.1615071317924	5		Pyramidal Cell	Deep	0.7932478740957	279.30664516131	0.67
108	13431	0.4948974756649	5		Wide Interneuron	Deep	0.2233638597275	94.590349335519	0.66
109	7520	0.27999232448701	5		Pyramidal Cell	Deep	0.13297872340426	140.64379633626	0.66
110	12514	0.46114830674736	5		Pyramidal Cell	Deep	0.95892600287678	80.600488003971	0.68
111	21318	0.78529557139492	5		Pyramidal Cell	Deep	1.031991744066	113.56026649516	0.63
112	12124	0.44666366895318	5		Pyramidal Cell	Deep	1.1547344110855	89.900322965474	0.65
113	59009	2.1738320657684	5		Wide Interneuron	Deep	1.0845803182565	77.492976197824	0.43
114	9682	0.35709247026987	5		Wide Interneuron	Deep	0.20656889072506	109.94372053399	0.72
115	31434	1.158437348651	5		Pyramidal Cell	Deep	0.31812686899536	108.03921941001	0.65
116	88031	3.2435387713585	4		Wide Interneuron	Superficial	0.18175415478638	134.979832446	0.7
117	390103	14.370155494901	4		Narrow Interneuron	Superficial	2.3173367033835	57.635216140782	0.4
118	125619	4.6275836828796	4		Wide Interneuron	Superficial	0.50151649033984	171.96235282734	0.73
119	29105	1.0721290481933	4		Pyramidal Cell	Superficial	0.30922521903453	112.77254769531	0.64
120	23464	0.86440590874635	4		Pyramidal Cell	Superficial	0	200.40118238233	0.68
121	65395	2.4099420422298	4		Wide Interneuron	Superficial	0.21408364553865	120.85588967627	0.68
122	27767	1.0229831246376	4		Pyramidal Cell	Superficial	0.79230741527713	98.861638311114	0.64
123	12649	0.46609497164997	4		Pyramidal Cell	Superficial	0.15811526602894	96.541771618548	0.6
124	10275	0.3787199406804	4		Wide Interneuron	Superficial	0.29197080291971	128.953983892	0.61
125	8921	0.32865301258857	4		Pyramidal Cell	Superficial	0.67257033964802	92.049083440988	0.69
126	3074	0.11330583439312	4		Narrow Interneuron	Superficial	0	69.042307190943	0.22
127	13598	0.50111837603978	4		Wide Interneuron	Superficial	0.073540226503898	85.163979948628	0.45
128	69012	2.5423115262091	4		Wide Interneuron	Superficial	0.36225583956413	69.422118456267	0.7
129	8171	0.3010750675466	4		Pyramidal Cell	Superficial	0	150.89512526205	0.68
130	19052	0.7035420470961	3		Pyramidal Cell	Deep	3.8316187276926	78.999698560158	0.61
131	34555	1.2731291445054	4		Wide Interneuron	Superficial	0.26045434814065	112.36350872719	0.66
132	3137	0.11572629036829	3		Pyramidal Cell	Deep	0	43.158359271783	0.64
133	40654	1.497691812447	3		Narrow Interneuron	Deep	0.8117282432233	54.535451532966	0.4
134	35353	1.302666760377	2		Pyramidal Cell	Superficial	0.48086442451843	54.200585476975	0.5
135	355366	13.09041977434	1		Narrow Interneuron	Deep	0.064722004918872	134.49716531293	0.32
136	43742	1.6114745713295	1		Wide Interneuron	Deep	0.068583969640163	200.90704948468	0.57
137	28365	1.0450386340449	1		Pyramidal Cell	Deep	1.7274810505905	62.026976419679	0.58
138	140738	5.1844120733301	1		Pyramidal Cell	Deep	1.1368642441984	57.074226811371	0.46