Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140328-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140328-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140328-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140328-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140328-05-postrun.mpg	5	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	75	49388

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	4864	0.38666273511856	16		Pyramidal Cell	Superficial	0	261.21550391879	0.68
2	2896	0.22958364601487	16		Wide Interneuron	Superficial	0	205.45241934573	0.68
3	2276	0.18008185139493	16		Wide Interneuron	Superficial	0	95.250249405031	0.64
4	6185	0.48863686813678	16		Wide Interneuron	Superficial	0.32336297493937	120.7517137812	0.62
5	10907	0.8617340625477	16		Wide Interneuron	Superficial	0.73347391583387	108.63689683906	0.61
6	176793	13.964918073318	15		Wide Interneuron	Deep	1.4480211320584	109.4428163246	0.44
7	4511	0.35827647223226	16		Pyramidal Cell	Superficial	0.22168033695411	119.72691293861	0.72
8	59587	4.7066815854158	15		Wide Interneuron	Deep	0.93980230587209	79.801105801401	0.58
9	6048	0.47863546347535	15		Pyramidal Cell	Deep	0.49603174603175	125.45614983529	0.61
10	57027	4.5046601039356	15		Narrow Interneuron	Deep	0.36824662002209	114.62320532367	0.34
11	5968	0.47758733569306	15		Pyramidal Cell	Deep	0.33512064343164	148.71718185275	0.62
12	73531	5.8080280041561	15		Wide Interneuron	Deep	0.24479471243421	119.91510909653	0.61
13	17175	1.3889925185588	14		Pyramidal Cell	Superficial	0.17467248908297	163.82371177307	0.55
14	387631	30.618043273066	14		Narrow Interneuron	Superficial	1.8161602142244	158.49286674093	0.4
15	1778	0.1418190340231	14		Wide Interneuron	Superficial	0	150.41811215336	0.64
16	8965	0.70812472451559	14		Wide Interneuron	Superficial	0	170.77888570391	0.63
17	3844	0.30402019972213	14		Wide Interneuron	Superficial	1.3007284079084	118.54125165228	0.63
18	6520	0.51613368798209	14		Pyramidal Cell	Superficial	0.30674846625767	130.77302154952	0.59
19	207217	16.367720403882	13		Narrow Interneuron	Deep	2.0027314361273	88.816676854984	0.42
20	10901	0.88020079947118	13		Pyramidal Cell	Deep	0.091734703238235	138.54533574315	0.64
21	9901	0.78265566434034	13		Pyramidal Cell	Deep	0.70699929300071	94.035067691446	0.61
22	5130	0.40657255362709	12		Pyramidal Cell	Superficial	0.38986354775828	104.62600186841	0.63
23	7073	0.56009407331503	12		Wide Interneuron	Superficial	0.42414816909374	114.50055883306	0.68
24	9305	0.73936590597317	12		Pyramidal Cell	Superficial	0	144.74526979331	0.71
25	34542	2.7287121663529	12		Wide Interneuron	Superficial	0.11580105378959	168.30273438116	0.63
26	8133	0.64385398503105	12		Wide Interneuron	Superficial	0.12295585884667	105.24402607869	0.66
27	186160	14.704371072166	11		Wide Interneuron	Deep	4.8667812634293	86.010519650833	0.52
28	12648	0.99935065910921	11		Pyramidal Cell	Deep	0.47438330170778	160.33516048476	0.66
29	9386	0.74194655980107	11		Pyramidal Cell	Deep	0.21308331557639	83.816283518546	0.69
30	6520	0.52864266641393	11		Pyramidal Cell	Deep	0	155.05151110521	0.69
31	7923	0.6258654057526	11		Pyramidal Cell	Deep	0.50485927047835	149.12744611469	0.69
32	32385	2.5581283319182	11		Pyramidal Cell	Deep	0.80284082136792	73.02600636207	0.58
33	6247	0.49540702492871	11		Pyramidal Cell	Deep	0.1600768368817	133.78033730733	0.64
34	2815	0.22396167825536	11		Pyramidal Cell	Deep	0	154.62386385714	0.72
35	4209	0.33569666363337	11		Pyramidal Cell	Deep	0.2375861249703	162.79575124486	0.66
36	6991	0.55374466203928	11		Pyramidal Cell	Deep	0	133.9490006523	0.68
37	22171	1.7512704422031	10		Wide Interneuron	Deep	0	141.31314958245	0.58
38	10615	0.8389335440433	9		Wide Interneuron	Deep	0	92.049422628771	0.59
39	1012	0.081846591746572	8		Pyramidal Cell	Superficial	0	495.71714600736	0.68
40	13591	1.0737767293305	8		Pyramidal Cell	Superficial	0.441468618939	192.32673850629	0.61
41	1941	0.15401478272924	8		Pyramidal Cell	Superficial	0	386.16936664699	0.67
42	3576	0.28296593610404	8		Pyramidal Cell	Superficial	0.27964205816555	168.52337412882	0.68
43	3213	0.25530409250196	8		Pyramidal Cell	Superficial	0.31123560535325	123.19715309209	0.62
44	3904	0.31006817206962	8		Pyramidal Cell	Superficial	0	279.24211769575	0.65
45	21384	1.6897284093459	7		Pyramidal Cell	Superficial	1.1690983913206	112.30466441237	0.61
46	17636	1.3934948749932	7		Pyramidal Cell	Superficial	0.22680880018145	216.17028081199	0.61
47	15471	1.2227137151298	7		Pyramidal Cell	Superficial	1.422015383621	96.940124014763	0.65
48	2999	0.239002365713	7		Pyramidal Cell	Superficial	0.33344448149383	126.75195025457	0.69
49	195528	15.444380131038	7		Narrow Interneuron	Superficial	4.0710281903359	70.976270897322	0.34
50	4407	0.35106423046306	7		Pyramidal Cell	Superficial	0	192.46521257194	0.7
51	6809	0.53834114197463	7		Wide Interneuron	Superficial	0	228.03741725455	0.66
52	39881	3.1501135503338	6		Pyramidal Cell	Superficial	0.57671572929465	124.3413466308	0.68
53	166293	13.136217215918	6		Narrow Interneuron	Superficial	0.31270107581197	130.34309407467	0.32
54	6104	0.48242672148332	6		Pyramidal Cell	Superficial	0.32765399737877	70.497749592727	0.71
55	5367	0.45102682723872	6		Pyramidal Cell	Superficial	0	247.96100578689	0.62
56	5038	0.3988346744301	6		Pyramidal Cell	Superficial	0	114.45998424679	0.66
57	19001	1.5011593574357	6		Pyramidal Cell	Superficial	0.42103047208042	97.465286374037	0.64
58	12518	0.98912951952157	6		Pyramidal Cell	Superficial	0.079884965649465	104.20529433312	0.64
59	4945	0.39131135898613	6		Pyramidal Cell	Superficial	0	227.00388447376	0.7
60	5710	0.46078214565538	6		Wide Interneuron	Superficial	0.17513134851138	223.4644052529	0.71
61	21731	1.7182041735749	6		Wide Interneuron	Superficial	0.23008605218352	77.981629978489	0.67
62	28894	2.2822624903596	6		Wide Interneuron	Superficial	0.1730463071918	128.87071938584	0.6
63	27649	2.184965254793	5		Pyramidal Cell	Superficial	0	133.39723930641	0.69
64	3650	0.28862511689861	5		Pyramidal Cell	Superficial	0	146.72980895336	0.69
65	8222	0.64976635339991	5		Pyramidal Cell	Superficial	0.12162490878132	136.79296398135	0.67
66	9182	0.72551423053258	5		Pyramidal Cell	Superficial	0.10890873448051	99.736629654236	0.65
67	8139	0.6431199784846	5		Pyramidal Cell	Superficial	0.24573043371422	111.69893763935	0.63
68	4468	0.35297015956064	5		Wide Interneuron	Superficial	0	175.21452354072	0.69
69	22611	1.7866829160965	5		Wide Interneuron	Superficial	0.35381009243289	100.85935089814	0.68
70	21263	1.6798226307019	4		Pyramidal Cell	Superficial	0	118.65386720452	0.66
71	6202	0.4968974833192	4		Pyramidal Cell	Superficial	0	110.82302907753	0.65
72	7340	0.58673662592315	4		Pyramidal Cell	Superficial	0.13623978201635	230.13373256952	0.72
73	4975	0.39305719260255	4		Pyramidal Cell	Superficial	0.60301507537688	93.774116916157	0.63
74	5548	0.43855510920813	4		Pyramidal Cell	Superficial	0	98.23926027185	0.73
75	6787	0.54197169293906	4		Pyramidal Cell	Superficial	0	173.51329167412	0.68