Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 124, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
	Rat09-20140329-01-prerun.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140329-02-presleep.mpg	2	Video	30
Basler, acA1300-200uc	Rat09-20140329-03-run.mpg	3	Video	30
Basler, acA1300-200uc	Rat09-20140329-04-postsleep.mpg	4	Video	30
Basler, acA1300-200uc	Rat09-20140329-05-postrun.mpg	5	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	67	49452

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	324099	16.117880804945	16		Narrow Interneuron	Deep	0.52453108463772	241.47329520464	0.23
2	242681	12.068922293593	16		Narrow Interneuron	Deep	1.071365290237	64.013201000841	0.34
3	6788	0.33971559493841	16		Wide Interneuron	Deep	0	84.788802599169	0.64
4	6300	0.31752927627487	16		Wide Interneuron	Deep	0	161.8626682352	0.61
5	4932	0.24540752801027	16		Wide Interneuron	Deep	0	105.52591144511	0.65
6	5649	0.28258517956589	16		Wide Interneuron	Deep	0	272.00526454871	0.66
7	553148	27.508826889134	15		Narrow Interneuron	Deep	1.4444597106019	91.827696484426	0.32
8	148810	7.4006397840909	15		Narrow Interneuron	Deep	0.47711847322089	70.113619274939	0.34
9	3957	0.19700238835898	15		Pyramidal Cell	Deep	0	143.29500905328	0.63
10	5468	0.27231770188721	15		Pyramidal Cell	Deep	0	225.23986702463	0.59
11	7107	0.35366041477708	15		Wide Interneuron	Deep	0.1407063458562	155.40912432287	0.53
12	330559	16.439129383939	14		Narrow Interneuron	Superficial	3.9206314152693	112.76251970628	0.34
13	113142	5.626808274592	14		Narrow Interneuron	Superficial	0.30934577787205	101.81420284405	0.33
14	6839	0.34124748659613	14		Pyramidal Cell	Superficial	0.14622020763269	269.98206209218	0.66
15	2423	0.12071480381787	14		Wide Interneuron	Superficial	0.41271151465126	164.00604199976	0.61
16	11306	0.56241105889569	14		Wide Interneuron	Superficial	0.088448611356802	96.51363241626	0.61
17	12422	0.61813007198844	13		Pyramidal Cell	Superficial	0.080502334567702	179.13447161571	0.67
18	78223	3.9114337354032	13		Wide Interneuron	Superficial	0.44743873285351	135.98898304742	0.56
19	473692	23.55752944938	13		Narrow Interneuron	Superficial	6.7997770703326	98.488993707272	0.36
20	817195	40.640179643822	13		Narrow Interneuron	Superficial	2.348276727097	108.68852538479	0.4
21	81885	4.0723347407734	13		Narrow Interneuron	Superficial	1.06246565305	70.987497850631	0.37
22	3838	0.21097875501657	13		Pyramidal Cell	Superficial	0	227.14254864589	0.73
23	43636	2.1701776461686	12		Wide Interneuron	Deep	0.18333486112384	146.30908987193	0.63
24	6603	0.33063758132205	12		Pyramidal Cell	Deep	0.75723156141148	65.230551946517	0.56
25	3416	0.17063088474409	12		Wide Interneuron	Deep	0.29274004683841	131.82588028861	0.65
26	46007	2.2889353882252	12		Narrow Interneuron	Deep	0.34777316495316	78.852906743829	0.28
27	6309	0.32736932903272	12		Wide Interneuron	Deep	0	264.49949594342	0.6
28	94462	4.6977766817747	11		Narrow Interneuron	Superficial	1.1433168893312	106.22109290242	0.34
29	3679	0.23189358690091	11		Pyramidal Cell	Superficial	0	199.75616035369	0.73
30	38143	1.8983973630219	11		Wide Interneuron	Superficial	0.62921112655009	99.066391380826	0.71
31	21563	1.0727556909184	11		Wide Interneuron	Superficial	0.3710058897185	92.34590804773	0.72
32	12407	0.63210716804128	11		Pyramidal Cell	Superficial	0.080599661481422	137.12413636626	0.67
33	78781	3.9180292441711	10		Wide Interneuron	Superficial	0.92661936253665	47.135028850832	0.44
34	3028	0.151062567389	10		Wide Interneuron	Superficial	0	63.0667259501	0.63
35	30104	1.4974145449659	7		Pyramidal Cell	Superficial	0.46505447781026	100.06810316238	0.63
36	3699	0.18454107681195	7		Pyramidal Cell	Superficial	0.27034333603677	118.06960940749	0.64
37	7815	0.38882695326349	7		Wide Interneuron	Superficial	0.12795905310301	123.23814472507	0.7
38	42844	2.1308963248288	7		Wide Interneuron	Superficial	0.65353375035011	79.845235744765	0.58
39	17531	0.87184863036787	7		Wide Interneuron	Superficial	0.28520905823969	105.89059529533	0.68
40	6631	0.3298485931286	7		Wide Interneuron	Superficial	0.45242044940431	279.75656460157	0.59
41	3306	0.16688017839643	7		Wide Interneuron	Superficial	0	173.24325036801	0.62
42	33668	1.6839294400454	7		Wide Interneuron	Superficial	0	130.40181225304	0.68
43	2544	0.12832632464281	7		Pyramidal Cell	Superficial	0	422.20863461278	0.7
44	4650	0.23288314867152	7		Pyramidal Cell	Superficial	0	143.02538627532	0.57
45	10911	0.54303347832749	7		Wide Interneuron	Superficial	0	159.14362190253	0.66
46	87435	4.3483018150745	7		Wide Interneuron	Superficial	0.82346886258363	57.645686287433	0.47
47	16517	0.82171394394883	7		Wide Interneuron	Superficial	0	130.69314089614	0.66
48	21813	1.0861536118775	7		Pyramidal Cell	Superficial	0	125.61761650278	0.65
49	14757	0.73421256594134	7		Wide Interneuron	Superficial	0.33882225384563	99.232832483936	0.64
50	3679	0.18338226638305	6		Pyramidal Cell	Superficial	0	154.09688005479	0.73
51	13449	0.672008282236	6		Pyramidal Cell	Superficial	0	138.31832147271	0.65
52	9003	0.44919103665455	6		Wide Interneuron	Superficial	0.22214817283128	93.356453202685	0.69
53	69959	3.4796161028321	6		Wide Interneuron	Superficial	0.1572349519004	104.96235719443	0.67
54	7180	0.36092669527545	6		Pyramidal Cell	Superficial	0	135.49093372848	0.68
55	11144	0.55515700971322	5		Wide Interneuron	Superficial	0.1794687724336	133.13994806286	0.67
56	5991	0.29853694101266	5		Pyramidal Cell	Superficial	0.16691704223001	113.35511874702	0.64
57	6331	0.31511936752502	5		Narrow Interneuron	Superficial	0.3159058600537	66.090683742124	0.22
58	44512	2.2159171015018	5		Wide Interneuron	Superficial	0.22465851905104	145.39024624866	0.66
59	8173	0.40780395462309	5		Pyramidal Cell	Superficial	0.1223540927444	152.12467427351	0.67
60	40752	2.0268266008189	5		Pyramidal Cell	Superficial	0.12269336474283	132.72924271096	0.65
61	11060	0.55034479001575	5		Pyramidal Cell	Superficial	0	103.8493976119	0.71
62	40148	1.9985988352636	4		Wide Interneuron	Superficial	0.099631363953373	65.802823134706	0.67
63	12995	0.64629505849662	4		Wide Interneuron	Superficial	0.15390534821085	61.302701706202	0.65
64	9112	0.45369529979511	4		Pyramidal Cell	Superficial	0.21949078138718	65.933112902731	0.62
65	4312	0.21987740880909	4		Pyramidal Cell	Superficial	0	238.44422983939	0.73
66	12105	0.60204135288017	4		Wide Interneuron	Superficial	0.16522098306485	70.957631045396	0.67
67	71239	3.5429374638291	4		Wide Interneuron	Superficial	0.67378823397296	54.8370295526	0.43