Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000	453600000	166	16	0.3815

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Implanted probes

Rat09 : #1 Silicon probe NeuroNexus Buzsaki32 (32 ch, 4 shanks, staggered) | Region: HIP | Coordinates: -3.5, 2.5, 1.6
Rat09 : #2 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, -5, 8
Rat09 : #3 Silicon probe NeuroNexus Buzsaki64L (64 ch, 8 shanks, staggered) | Region: BLA | Coordinates: -2.5, 5, 8

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	34, 39, 33, 40, 36, 37, 35, 38
2	42, 47, 41, 48, 44, 45, 43, 46
3	17, 26, 18, 25, 19, 23, 21, 22
4	27, 20, 29, 24, 30, 28, 31, 32
5	14, 5, 10, 3, 6, 4, 2, 1
6	8, 15, 7, 16, 9, 13, 12, 11
7	49, 56, 50, 55, 51, 54, 52, 53
8	57, 64, 58, 63, 59, 62, 60, 61
9	98, 103, 97, 104, 100, 101, 99, 102
10	106, 111, 105, 112, 108, 109, 107, 110
11	81, 90, 82, 89, 83, 87, 85, 86
12	91, 84, 93, 88, 94, 92, 95, 96
13	78, 69, 74, 67, 70, 68, 66, 65
14	72, 79, 71, 80, 73, 77, 76, 75
15	113, 120, 114, 119, 115, 118, 116, 117
16	121, 128, 122, 127, 123, 126, 125

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description
			abc

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Equipment	File names	Epoch	Type	Framerate	Notes
Basler, acA1300-200uc	Rat09-20140408-01-sleep.mpg	1	Video	30
Basler, acA1300-200uc	Rat09-20140408-02-smelltest.mpg	2	Video	30

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
HIP – Hippocampal region (View in Atlas)		1,2,3,4
BLA – Basolateral amygdalar nucleus (View in Atlas)		5,6,7,8,13,14,15,16,17,18,19
PIR – Piriform area (View in Atlas)		9,10,11,12
EPd – Endopiriform nucleus, dorsal part (View in Atlas)		20

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups
Accelerometer	161,162,163	22
Airpuff	164	21
Rewards	165,166	21
Ripple	3	4
RippleNoise	17

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Klustakwik			Gabrielle Girardeau		Yes	83	50260

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#	Spike count	Firing rate (Hz)	Spike group	Brain region	Cell type	Deep/Superficial	Refractory violation (‰)	Peak voltage (µV)	Trough-to-Peak (ms)	Isolation distance
1	50599	2.486006625938	16		Wide Interneuron	Superficial	0.31621178284156	91.32455205656	0.65
2	15289	0.75120386634985	16		Pyramidal Cell	Superficial	0.13081300281248	58.123246128838	0.45
3	5999	0.29490350868049	16		Pyramidal Cell	Superficial	0.16669444907485	173.70144581962	0.66
4	19021	0.93450357457689	16		Pyramidal Cell	Superficial	0.31544082855791	106.33672758767	0.69
5	6952	0.34157919194686	16		Pyramidal Cell	Superficial	0.28768699654776	76.794711626918	0.73
6	75771	3.7225258666689	16		Wide Interneuron	Superficial	1.2273825078196	69.535051041751	0.65
7	15476	0.76033451751324	16		Pyramidal Cell	Superficial	0.19384853967433	182.78204116343	0.73
8	21466	1.055276930579	16		Pyramidal Cell	Superficial	0.46585297680052	113.67428241345	0.72
9	14700	0.72222941844955	16		Pyramidal Cell	Superficial	0.27210884353741	124.57921637176	0.7
10	37802	1.8573122219303	16		Pyramidal Cell	Superficial	0.18517538754563	129.31918748515	0.51
11	45624	2.2414675886214	15		Wide Interneuron	Deep	0.9863229879011	82.250830377869	0.67
12	101769	5.0002425708966	15		Pyramidal Cell	Deep	4.0778626104216	65.22187988574	0.45
13	47529	2.3351036334582	15		Pyramidal Cell	Deep	0.94679038060973	64.32016860208	0.45
14	14754	0.7249732540198	15		Pyramidal Cell	Deep	0	151.98503513	0.71
15	15723	0.77261045946949	15		Pyramidal Cell	Deep	0	126.599891299	0.68
16	31284	1.5370201653862	14		Pyramidal Cell	Deep	0.63930443677279	75.018536792474	0.7
17	16335	0.80274618906137	14		Pyramidal Cell	Deep	0.18365472910927	91.132619542429	0.73
18	6832	0.33585236618205	14		Pyramidal Cell	Deep	0.29274004683841	87.301553165338	0.7
19	12160	0.59776257321372	14		Wide Interneuron	Deep	0.082236842105263	168.89825005213	0.69
20	20018	0.9837031644202	14		Pyramidal Cell	Deep	0.74932560695374	87.954984695809	0.63
21	71668	3.5209125603242	13		Wide Interneuron	Deep	1.2976502762739	66.667538455371	0.49
22	4355	0.21426197046083	13		Pyramidal Cell	Deep	0	70.225398222733	0.61
23	239178	11.750390582284	11		Narrow Interneuron	Deep	0.22159228691602	120.64344906089	0.3
24	20378	1.0014034365961	13		Pyramidal Cell	Deep	0.83423299636863	91.378529100615	0.65
25	4120	0.20246539109064	10		Pyramidal Cell	Deep	0.24271844660194	80.469595250392	0.64
26	9498	0.46674494710326	10		Pyramidal Cell	Deep	1.0528532322594	138.78557767191	0.7
27	3444	0.16925180866861	9		Pyramidal Cell	Deep	0.29036004645761	105.17689197759	0.68
28	6369	0.31319952396328	9		Pyramidal Cell	Deep	0.7850525985241	163.02893649954	0.63
29	11425	0.56179342813359	9		Pyramidal Cell	Deep	0.26258205689278	98.554660324124	0.62
30	3978	0.19573912147726	9		Pyramidal Cell	Deep	1.5082956259427	231.53275874301	0.7
31	180712	8.8780576245247	9		Narrow Interneuron	Deep	2.2632697330559	80.811904925909	0.34
32	11460	0.56305493522613	9		Pyramidal Cell	Deep	0.087260034904014	202.05235756007	0.68
33	8865	0.43581193130706	9		Wide Interneuron	Superficial	0.22560631697688	76.146867135013	0.59
34	2377	0.11690002861518	9		Pyramidal Cell	Deep	0	248.93376402367	0.65
35	28974	1.4234552139471	8		Wide Interneuron	Deep	0.58673293297439	92.370969964518	0.71
36	37196	1.8274754363038	8		Pyramidal Cell	Deep	0.94096139369825	142.43466296473	0.68
37	29919	1.4700346453101	8		Wide Interneuron	Deep	0.30081219292089	134.900138042	0.64
38	6564	0.32261466584842	8		Pyramidal Cell	Deep	0	284.64451090312	0.7
39	13489	0.66306713804486	8		Wide Interneuron	Deep	0.37067239973312	100.73382725153	0.66
40	3296	0.16215872424084	8		Pyramidal Cell	Deep	0	300.87271218031	0.63
41	7595	0.40105377182175	8		Wide Interneuron	Deep	0	126.31355968901	0.68
42	2562	0.15267455472685	8		Wide Interneuron	Deep	0	139.10450495701	0.56
43	26546	1.304392080408	8		Pyramidal Cell	Deep	0.37670458826189	262.57368526262	0.61
44	2699	0.1329255655691	8		Pyramidal Cell	Deep	0.37050759540571	185.17470554416	0.68
45	14278	0.70161423657152	8		Wide Interneuron	Deep	0.56030256338423	78.268974943228	0.63
46	4105	0.20209198683241	8		Pyramidal Cell	Deep	0	133.71503487992	0.61
47	3854	0.25128459878487	8		Wide Interneuron	Deep	0	224.26943562862	0.55
48	15369	0.75513816948911	8		Pyramidal Cell	Deep	0	241.53888143389	0.63
49	5207	0.35667092428455	8		Pyramidal Cell	Deep	0.38409832917227	170.55439911668	0.63
50	19873	0.97642595598436	8		Wide Interneuron	Deep	0.85543199315654	122.75594982318	0.63
51	24110	1.1846420256245	7		Pyramidal Cell	Deep	0.9539610120282	80.20436680773	0.67
52	13356	0.6566719388239	7		Pyramidal Cell	Deep	0.7487271638215	195.1773387416	0.73
53	36086	1.7728963239698	7		Wide Interneuron	Deep	0.16626946738347	62.864088583211	0.71
54	9712	0.47749706344468	7		Pyramidal Cell	Deep	0.51482701812191	135.35891082095	0.71
55	14085	0.69220044802004	7		Pyramidal Cell	Deep	0.35498757543486	124.62230985123	0.7
56	13534	0.66502903144828	7		Pyramidal Cell	Deep	0	281.48398547675	0.72
57	87386	4.2932634387465	7		Narrow Interneuron	Deep	0.90403497127686	55.393937259703	0.37
58	23848	1.1717710929447	7		Wide Interneuron	Deep	0.083864475008386	118.39456923236	0.69
59	38816	1.9071960120579	7		Pyramidal Cell	Deep	1.4169414674361	123.43887329192	0.69
60	9829	0.48298809921549	7		Wide Interneuron	Deep	0	99.4270526569	0.73
61	11529	0.56649032122861	7		Wide Interneuron	Deep	0	148.55228407983	0.73
62	5674	0.27887131734458	7		Wide Interneuron	Deep	0	178.09782892761	0.69
63	12622	0.6202664677424	7		Pyramidal Cell	Deep	0.47536048169862	103.92132240923	0.68
64	11157	0.54937651010219	7		Pyramidal Cell	Deep	0.17925965761405	172.18737936132	0.69
65	329679	16.196442495245	6		Narrow Interneuron	Deep	1.5651588363226	84.151902984698	0.34
66	15972	0.7853298785604	5		Pyramidal Cell	Superficial	0.62609566741798	116.31913151603	0.67
67	13607	0.66864575556468	5		Pyramidal Cell	Superficial	0.22047475564048	121.50860683	0.71
68	12405	0.6096344745214	5		Pyramidal Cell	Superficial	0	213.59417938796	0.69
69	5457	0.26832021543974	5		Pyramidal Cell	Superficial	0.36650174088327	91.419656205746	0.72
70	6007	0.29530413310973	5		Pyramidal Cell	Superficial	0	138.63373274103	0.73
71	20538	1.0091588164498	5		Wide Interneuron	Superficial	0.24345116369656	199.23989382802	0.66
72	5900	0.29002547721431	5		Pyramidal Cell	Superficial	0.33898305084746	187.9238184458	0.72
73	156878	7.7072010929391	5		Wide Interneuron	Superficial	0.6884330498859	71.619321883455	0.43
74	12881	0.63337901872282	5		Pyramidal Cell	Superficial	0	185.96809281614	0.73
75	6382	0.31414019981133	5		Pyramidal Cell	Superficial	0.62676277029144	146.85754127688	0.73
76	12177	0.59848418655932	4		Pyramidal Cell	Superficial	0.24636610002464	93.213954556621	0.6
77	1616	0.07957610792163	4		Pyramidal Cell	Superficial	0	123.40304674491	0.66
78	3176	0.15619679838563	4		Wide Interneuron	Superficial	0	157.18779193125	0.58
79	3766	0.18522244115948	4		Pyramidal Cell	Superficial	0.26553372278279	311.90273268509	0.63
80	6611	0.34026938670805	4		Pyramidal Cell	Superficial	0	193.75545242321	0.68
81	12375	0.60814895868398	4		Wide Interneuron	Superficial	0.64646464646465	117.93968985739	0.72
82	5216	0.25635761856335	4		Wide Interneuron	Superficial	0	365.60899889639	0.67
83	8948	0.43984616552406	4		Pyramidal Cell	Superficial	0.11175681716585	149.05721514315	0.64