Sessions

Extracellular

Equipment	File format	Sampling rate	nSamples	nChannels	Spike groups	Least significant bit
Amplipex, KJE-1001 256 Channel system	dat	20000		134	14	0.3815

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Implanted probes

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group	Channels	Label
1	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
2	11, 12, 13, 14, 15, 16, 17, 18, 19, 20
3	21, 22, 23, 24, 25, 26, 27, 28, 29, 30
4	31, 32, 33, 34, 35, 36, 37, 38, 39, 40
5	41, 42, 43, 44, 45, 46, 47, 48, 49, 50
6	51, 52, 53, 54, 55, 56, 57, 58, 59, 60
7	61, 62, 63, 64
8	65, 66, 67, 68, 69, 70, 71, 72, 73, 74
9	75, 76, 77, 78, 79, 80, 81, 82, 83, 84
10	85, 86, 87, 88, 89, 90, 91, 92, 93, 94
11	95, 96, 97, 98, 99, 100, 101, 102, 103, 104
12	105, 106, 107, 108, 109, 110, 111, 112, 113, 114
13	115, 116, 117, 118, 119, 120, 121, 122, 123, 124
14	125, 126, 127, 128

This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment	Input type	Channel	Tag	Description

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Equipment	File names	Epoch	Type	Framerate	Notes
			Video	39

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Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region	Channels	Spike groups
CA1 – Field CA1 (View in Atlas)

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Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag	Channels	Spike groups

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Analysis tags

Tag	Value	Description

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Method	Format	Relative path	Channels	Spike sorter	Notes	Sorting completed	Units count	Sorting ID
Klustakwik	Neurosuite			Andres Grosmark		Yes	0	51449

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