Details for Peter_MS21_180621_141817
Date & time: 2018-06-21, 14:18:17
Animal subject: MS21
Investigator:
Experimenters: Michelle Hernandez, Peter Petersen
Project: Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats
Data repositories: NYUshare_Datasets, download session from Web share
Created: 2018-07-30 17:52:21 by Michelle Hernandez
Updated: 2020-07-20 22:28:44 by Peter Petersen ADMINNotes:
Epochs
| Epochs | Behavioral paradigm | Maze type | Built maze | Manipulation | Duration | Notes |
|---|---|---|---|---|---|---|
| Peter_MS21_180621_141817 | ThetaMaze_AlternativeRunning | Theta maze | Theta_Maze_Peter | Thermal perturbation | 2238.732 |
Extracellular
Equipment |
File format |
Sampling rate |
nSamples |
nChannels |
Spike groups |
Least significant bit |
|---|---|---|---|---|---|---|
| Intan Technologies, RHD2000 USB interface board (256ch) | dat | 20000 | 44774640 | 128 | 15 |
Implanted probes
Spike groups
Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.
Group |
Channels |
Label |
|---|---|---|
| 1 | 49,56,48,57,51,54,50,55,53,52 | |
| 2 | 59,36,58,34,61,33,60,32,63,62 | |
| 3 | 37,43,38,47,40,46,41,45,42,44 | |
| 4 | 39,27,35,24,29,22,25,23,21,20 | |
| 5 | 26,5,28,4,31,3,30,2,0,1 | |
| 6 | 6,15,7,14,8,13,9,12,10,11 | |
| 7 | 16,19,18,17 | |
| 8 | 113,118,112,119,115,116,114,117 | |
| 9 | 121,126,120,127,123,124,122,125 | |
| 10 | 96,105,97,104,98,102,100,101 | |
| 11 | 106,99,108,103,109,107,110,111 | |
| 12 | 93,84,89,82,85,83,81,80 | |
| 13 | 87,94,86,95,88,92,91,90 | |
| 14 | 64,71,65,70,66,69,67,68 | |
| 15 | 72,79,73,78,74,77,75,76 |
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.
Equipment |
Input type |
Channel |
Tag |
Description |
|---|---|---|---|---|
| aux | 4 | Temperature | MS temperature probe | |
| adc | 1 | WheelPosition | Running wheel | |
| dig | 1 | OptitrackSync | TTL sync | |
| dig | 2 | BaslerSync | TTL sync | |
| dig | 5 | ArduinoRemoteCh1 | Remote Button A | |
| dig | 6 | ArduinoRemoteCh2 | Remote Button B | |
| dig | 7 | ArduinoRemoteCh3 | Remote Button C | |
| dig | 8 | ArduinoRemoteCh4 | Remote Button D | |
| aux | 1 | AccelerometerX | Head mounted accelerometer | |
| aux | 2 | AccelerometerY | Head mounted accelerometer | |
| aux | 3 | AccelerometerZ | Head mounted accelerometer |
Equipment |
File names |
Epoch |
Type |
Framerate |
Notes |
|---|---|---|---|---|---|
| Take 2018-06-21 02.18.24 PM.csv | 1 | Head position | 120 | ||
| Basler acA1300-200uc (21965891)_20180621_141828450.avi | 1 | Video | 10 |
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.
Brain region |
Channels |
Spike groups |
|---|---|---|
| CA1 – Field CA1 (View in Atlas) | 1:128 |
Channel tags
Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.
Tag |
Channels |
Spike groups |
|---|---|---|
| Theta | 64 | |
| BadChannels |
Analysis tags
Tag |
Value |
Description |
|---|
Spike sorting
Method |
Format |
Relative path |
Channels |
Spike sorter |
Notes |
Sorting completed |
Units count |
Sorting ID |
|---|---|---|---|---|---|---|---|---|
| KiloSort | Phy | Kilosort_2018-06-22_130004 | Peter Petersen | Yes | 0 | 6105 |
Spike sorted units
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