Details for Peter_MS21_180712_103200_concat

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  • Date & time: 2018-07-12, 11:11:10

  • Animal subject: MS21

  • Investigator: Peter Petersen

  • Experimenters: Michelle Hernandez, Peter Petersen

  • Project: Brain temperature affects quantitative features of hippocampal sharp wave ripples, Theta rhythm perturbation by focal cooling of the septal pacemaker in awake rats

  • Data repositories: NYUshare_Datasets, download session from Web share

  • Created: 2018-08-01 13:57:32 by Michelle Hernandez
    Updated: 2022-04-12 15:46:43 by Peter Petersen

  • Notes:
    recordingID = 153. Cable came loose in the last three linear track

Epochs

Epochs Behavioral paradigm Maze type Built maze Manipulation Duration Notes
Peter_MS21_180712_103200 LinearTrack_EndToEnd Linear track Linear_Track_Peter 2008.62
Peter_MS21_180712_11110 Homecage_Sleep Homecage Homecage_Rat 2008.62
Peter_MS21_180712_134531 ThetaMaze_AlternativeRunning Theta maze Theta_Maze_Peter Thermal perturbation 4486.824
Peter_MS21_180712_142832 Homecage_Sleep Homecage Homecage_Rat 10911.672
Peter_MS21_180712_162828 LinearTrack_EndToEnd Linear track Linear_Track_Peter Thermal perturbation 12199.932
Peter_MS21_180712_165015 LinearTrack_EndToEnd Linear track Linear_Track_Peter Thermal perturbation 12922.164
Peter_MS21_180712_170332 LinearTrack_EndToEnd Linear track Linear_Track_Peter Thermal perturbation 13418.064

Extracellular

Equipment

File format

Sampling rate

nSamples

nChannels

Spike groups

Least significant bit
Intan Technologies, RHD2000 USB interface board (256ch) dat 20000 443322000 128 14 0.195

Implanted probes

Spike groups

Spike groups are typically defined by the group of channels within shanks. Channels are listed and comma-separated and labels can further be assigned to each group. Channels are 0-indexed.

Group

Channels

Label
1 50, 57, 49, 58, 52, 55, 51, 56, 54, 53
2 60, 37, 59, 35, 62, 34, 61, 33, 64, 63
3 38, 44, 39, 48, 41, 47, 42, 46, 43, 45
4 40, 28, 36, 25, 30, 23, 26, 24, 22, 21
5 27, 6, 29, 5, 32, 4, 31, 3, 1, 2
6 7, 16, 8, 15, 9, 14, 10, 13, 11, 12
7 17, 20, 19, 18
8 114, 121, 113, 122, 116, 119, 115, 120, 118, 117
9 124, 101, 123, 99, 126, 98, 125, 97, 128, 127
10 102, 108, 103, 112, 105, 111, 106, 110, 107, 109
11 104, 92, 100, 89, 94, 87, 90, 88, 86, 85
12 91, 70, 93, 69, 96, 68, 95, 67, 65, 66
13 71, 80, 72, 79, 73, 78, 74, 77, 75, 76
14 81, 84, 83, 82
This section is dedicated to extra inputs besides the primary recording channels. For extracellular recordings this includes any extra analog and digital channels. Further it can be inputs saved with an Arduino or Raspberry pi or an entirely different hardware solution.

Equipment

Input type

Channel

Tag

Description
aux 4 Temperature MS temperature probe
adc 1 WheelPosition Running wheel
dig 1 OptitrackSync TTL sync
dig 2 BaslerSync TTL sync
dig 5 ArduinoRemoteCh1 Remote Button A
dig 6 ArduinoRemoteCh2 Remote Button B
dig 7 ArduinoRemoteCh3 Remote Button C
dig 8 ArduinoRemoteCh4 Remote Button D
aux 1 AccelerometerX Head mounted accelerometer
aux 2 AccelerometerY Head mounted accelerometer
aux 3 AccelerometerZ Head mounted accelerometer

Equipment

File names

Epoch

Type

Framerate

Notes
OptiTrack, Flex 13 Take 2018-07-12 11.14.29 AM_002.csv 3 Head position 120
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180712_103202637.avi 1 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180712_134535930.avi 3 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180712_162831624.avi 5 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180712_165021592.avi 6 Video 10
Basler, acA1300-200uc Basler acA1300-200uc (21965891)_20180712_170335464.avi 7 Video 10
Brain regions are defined according to the Allen Institute Atlas. A brain region can be assigned to a list of channels or spike groups.

Brain region

Channels

Spike groups
CA1 – Field CA1 (View in Atlas) 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128

Channel tags

Examples and reserved tags: Bad, Good, Theta, Gamma, Delta, Ripple, RippleNoise.

Tag

Channels

Spike groups
Theta 64

Analysis tags

Tag

Value

Description

Spike sorting

Method

Format

Relative path

Channels

Spike sorter

Notes

Sorting completed

Units count

Sorting ID
KiloSort Phy Kilosort_2019-07-31_182947 Peter Petersen Yes 55 7246

Spike sorted units

# Spike count Firing rate (Hz) Spike group Brain region Cell type Deep/Superficial Refractory violation (‰) Peak voltage (µV) Trough-to-Peak (ms) Isolation distance
1 57116 2.5767427944098 2 CA1 Pyramidal Cell Unknown 7.3534561243785 97.833117281592 0.62
2 52666 2.3763109153723 2 CA1 Pyramidal Cell Unknown 6.227926935784 125.61738491371 0.71
3 35057 1.5826516745306 1 CA1 Pyramidal Cell Unknown 6.6748438257695 174.52158303079 0.73
4 117923 5.3206794023415 3 CA1 Pyramidal Cell Unknown 12.966088040501 61.60704926179 0.72
5 6641 0.29988396870156 11 CA1 Pyramidal Cell Unknown 0.30115946393615 385.65483483579 0.74
6 50417 2.2745377637658 1 CA1 Pyramidal Cell Unknown 6.8429299640994 153.53346533957 0.72
7 12357 0.55775320237316 3 CA1 Pyramidal Cell Unknown 1.3757384478433 71.290353156498 0.72
8 78239 3.5299737789168 3 CA1 Pyramidal Cell Unknown 5.8410767008781 108.02733613777 0.65
9 6068 0.274025480346 11 CA1 Pyramidal Cell Unknown 1.4831905075808 314.17333206728 0.73
10 54927 2.4780673981547 11 CA1 Wide Interneuron Unknown 0.8920931418064 405.39367533349 0.68
11 37929 1.7114019244024 11 CA1 Pyramidal Cell Unknown 0.65912626222679 345.96296958227 0.74
12 88708 4.0024720051825 2 CA1 Pyramidal Cell Unknown 12.084592145015 103.42187277203 0.68
13 1386 0.062561275265285 11 CA1 Pyramidal Cell Unknown 0.72150072150072 417.45322321014 0.74
14 74451 3.3593664795504 2 CA1 Pyramidal Cell Unknown 5.7353158453211 90.480324536063 0.72
15 2237 0.10208164041482 11 CA1 Pyramidal Cell Unknown 0 449.74813094129 0.58
16 57041 2.5738307311495 1 CA1 Pyramidal Cell Unknown 11.167405901019 146.46032360975 0.6
17 53538 2.7469116567624 1 CA1 Pyramidal Cell Unknown 12.551832343382 188.3710596439 0.65
18 1429 0.23675322819198 1 CA1 Pyramidal Cell Unknown 1.3995801259622 627.90037339468 0.55
19 166237 7.4996911577402 9 CA1 Narrow Interneuron Unknown 1.6181716465047 104.77780586778 0.37
20 5035 0.33807224224451 1 CA1 Pyramidal Cell Unknown 5.759682224429 360.22173768188 0.64
21 4229 0.21322833121223 1 CA1 Pyramidal Cell Unknown 0.94585008276188 123.48101848482 0.56
22 18992 0.9042473283085 1 CA1 Pyramidal Cell Unknown 1.7902274641955 449.45474489551 0.73
23 58603 2.6442613597259 10 CA1 Pyramidal Cell Unknown 5.716430899442 171.33224634874 0.69
24 33495 1.5112665837482 10 CA1 Pyramidal Cell Unknown 2.7765338110166 268.20186516115 0.72
25 32776 1.4789994620983 10 CA1 Pyramidal Cell Unknown 10.587014888943 361.30875124675 0.69
26 520152 23.466239152517 10 CA1 Narrow Interneuron Unknown 0.16149125640197 300.72962557609 0.21
27 9768 0.44284384643438 11 CA1 Pyramidal Cell Unknown 1.5356265356265 182.8227378194 0.7
28 12124 0.7210861322397 1 CA1 Pyramidal Cell Unknown 2.2269877928077 646.19402406258 0.72
29 1787 0.081025982089767 10 CA1 Pyramidal Cell Unknown 0 383.32307821595 0.72
30 4496 0.20299743410521 9 CA1 Pyramidal Cell Unknown 0 210.5147065997 0.68
31 14561 0.65755730255589 10 CA1 Pyramidal Cell Unknown 0.41205961129043 123.33987092971 0.72
32 13950 0.73029248407685 1 CA1 Pyramidal Cell Unknown 5.8781362007168 106.63145819549 0.65
33 17969 0.81150771501478 3 CA1 Pyramidal Cell Unknown 1.113027992654 75.027081628108 0.73
34 26470 1.1943389435018 9 CA1 Pyramidal Cell Unknown 4.5334340763128 107.28906185561 0.71
35 31638 1.4361924878431 2 CA1 Pyramidal Cell Unknown 0.75858145268348 122.45021155261 0.67
36 12439 0.56179269471544 10 CA1 Pyramidal Cell Unknown 1.2862770319157 107.43502862241 0.69
37 19602 0.8846724227195 10 CA1 Pyramidal Cell Unknown 0.20406081012142 321.91300680359 0.68
38 17669 0.79724926488059 10 CA1 Pyramidal Cell Unknown 3.8485483049409 163.02261108753 0.68
39 39469 1.7907359303549 13 CA1 Wide Interneuron Unknown 1.9002254934252 448.29950830896 0.68
40 41903 1.893788471434 8 CA1 Wide Interneuron Unknown 0.047729279526526 87.138762071946 0.62
41 1923 0.11983126524022 11 CA1 Wide Interneuron Unknown 0 192.24928998136 0.72
42 28657 1.2984861406054 11 CA1 Pyramidal Cell Unknown 0.2442684160938 203.53733016105 0.67
43 2084 0.11509592108699 11 CA1 Pyramidal Cell Unknown 0 209.71557201846 0.68
44 2203 0.099570124405865 11 CA1 Pyramidal Cell Unknown 0 192.69783305384 0.69
45 53124 2.3972110585543 5 CA1 Pyramidal Cell Unknown 6.4189443565997 320.9156854831 0.71
46 5787 0.26150264717092 5 CA1 Pyramidal Cell Unknown 0.51840331778123 266.18745669476 0.72
47 110196 9.8641855984707 4 CA1 Wide Interneuron Unknown 0.57170859196341 86.492286039685 0.41
48 60132 2.712859201651 2 CA1 Wide Interneuron Unknown 0.99780482937537 94.317230776351 0.58
49 241067 10.876029193219 12 CA1 Narrow Interneuron Unknown 0.41897065960915 354.22944305226 0.21
50 9416 0.42517729240607 10 CA1 Pyramidal Cell Unknown 2.5488530161427 217.34487399844 0.67
51 17686 0.79804843540779 12 CA1 Pyramidal Cell Unknown 2.9401786723962 229.23480114553 0.68
52 114631 5.1717532248395 9 CA1 Narrow Interneuron Unknown 0.94215351868168 76.844273250568 0.41
53 25748 1.2842220128382 1 CA1 Pyramidal Cell Unknown 6.2140748796023 126.55914056367 0.59
54 9004 0.40671440125375 10 CA1 Pyramidal Cell Unknown 6.7747667703243 395.21666481012 0.61
55 356744 16.09596850795 10 CA1 Narrow Interneuron Unknown 0.88578924943377 263.82767963627 0.29