Brain regions

All brain regions in the database are according to the Allen Mouse Brain Atlas Ontologies. For a full structure graph definition, go to the atlas.

Brain region acronym

Name and link

Descriptions

PA PA – Posterior amygdalar nucleus
BMAp BMAp – Basomedial amygdalar nucleus, posterior part
BMAa BMAa – Basomedial amygdalar nucleus, anterior part
CLA CLA – Claustrum
6b 6b – Layer 6b, isocortex
CTXsp CTXsp – Cortical subplate
APr APr – Area prostriata
Prosv-sr Prosv-sr – Prosubiculum, ventral part, stratum radiatum
ProSv-sp ProSv-sp – Prosubiculum, ventral part, pyramidal layer
ProSv-m ProSv-m – Prosubiculum, ventral part, molecular layer
HATA HATA – Hippocampo-amygdalar transition area
SUBv-sr SUBv-sr – Subiculum, ventral part, stratum radiatum
ProS ProS – Prosubiculum
ProSd ProSd – Prosubiculum, dorsal part
ProSd-m ProSd-m – Prosubiculum, dorsal part, molecular layer
ProSd-sp ProSd-sp – Prosubiculum, dorsal part, pyramidal layer
ProSd-sr ProSd-sr – Prosubiculum, dorsal part, stratum radiatum
ProSv ProSv – Prosubiculum, ventral part
POST3 POST3 – Postsubiculum, layer 3
PRE PRE – Presubiculum
PRE2 PRE2 – Presubiculum, layer 2
SUB SUB – Subiculum
SUBd SUBd – Subiculum, dorsal part
SUBd-m SUBd-m – Subiculum, dorsal part, molecular layer
SUBd-sp SUBd-sp – Subiculum, dorsal part, pyramidal layer
SUBd-sr SUBd-sr – Subiculum, dorsal part, stratum radiatum
SUBv SUBv – Subiculum, ventral part
SUBv-m SUBv-m – Subiculum, ventral part, molecular layer
SUBv-sp SUBv-sp – Subiculum, ventral part, pyramidal layer
PRE3 PRE3 – Presubiculum, layer 3