Brain regions

All brain regions in the database are according to the Allen Mouse Brain Atlas Ontologies. For a full structure graph definition, go to the atlas.

Brain region acronym

Name and link

Descriptions

ENTl2 ENTl2 – Entorhinal area, lateral part, layer 2
ENTl2/3 ENTl2/3 – Entorhinal area, lateral part, layer 2/3
ENTl2a ENTl2a – Entorhinal area, lateral part, layer 2a
ENTl2b ENTl2b – Entorhinal area, lateral part, layer 2b
ENTl3 ENTl3 – Entorhinal area, lateral part, layer 3
ENTl4 ENTl4 – Entorhinal area, lateral part, layer 4
ENTl4/5 ENTl4/5 – Entorhinal area, lateral part, layer 4/5
ENTl5 ENTl5 – Entorhinal area, lateral part, layer 5
DGlb-po DGlb-po – Dentate gyrus lateral blade, polymorph layer
DGlb-mo DGlb-mo – Dentate gyrus lateral blade, molecular layer
DGlb DGlb – Dentate gyrus lateral blade
DGcr-sg DGcr-sg – Dentate gyrus crest, granule cell layer
DGcr-po DGcr-po – Dentate gyrus crest, polymorph layer
DGcr-mo DGcr-mo – Dentate gyrus crest, molecular layer
DGlb-sg DGlb-sg – Dentate gyrus lateral blade, granule cell layer
DGmb DGmb – Dentate gyrus medial blade
RHP RHP – Retrohippocampal region
IG IG – Induseum griseum
FC FC – Fasciola cinerea
DGmb-sg DGmb-sg – Dentate gyrus medial blade, granule cell layer
DGmb-po DGmb-po – Dentate gyrus medial blade, polymorph layer
DGmb-mo DGmb-mo – Dentate gyrus medial blade, molecular layer
CA3so CA3so – Field CA3, stratum oriens
CA3sp CA3sp – Field CA3, pyramidal layer
CA3sr CA3sr – Field CA3, stratum radiatum
DG DG – Dentate gyrus
DG-mo DG-mo – Dentate gyrus, molecular layer
DG-po DG-po – Dentate gyrus, polymorph layer
DG-sgz DG-sgz – Dentate gyrus, subgranular zone
DGcr DGcr – Dentate gyrus crest